Comparison_2Hamlet + Amoxicillin 2...1	Comparison_2Hamlet + Amoxicillin 2...2	Comparison_2Hamlet + Amoxicillin 2...3	Comparison_2Hamlet + Amoxicillin 2...4	Comparison_2Hamlet + Amoxicillin 2...5	Comparison_2Hamlet + Amoxicillin 2...6
1	Coefficients	Standard Errors	Test Statistics W	p Values	Adjusted p Values	Differential Abundance
Lachnospiraceae_[G-11] bacterium_MOT-178 (SP1) 	-2.03056123763685	1.71584227218854	-1.18341951970148	0	0	TRUE
Alistipes sp._MOT-127 (SP10) 	5.95575098000227	1.36123183600562	4.3752657133547	1.21284646679588e-05	0.00145541576015506	TRUE
Turicimonas muris (SP11) 	6.98796581905452	1.38375901145947	5.04998757817244	4.41838794938709e-07	5.34624941875838e-05	TRUE
Bacteroides caecimuris (SP2) 	2.94614553388751	0.749747127189239	3.92951893651456	8.51159738378844e-05	0.00995856893903248	TRUE
Blautia caecimuris (SP20) 	5.41637515366166	1.55459379418865	3.48410959435772	0	0	TRUE
Peptococcaceae_[G-1] bacterium_MOT-146 (SP21) 	-0.957283432264208	1.2857952044463	-0.744506923772859	0	0	TRUE
Prevotella sp._MOT-128 (SP22) 	-1.97216418199298	1.73429694759685	-1.13715484809319	0.255473558515127	1	FALSE
Lactobacillus taiwanensis (SP23) 	-3.99093938250492	0.409535313720773	-9.74504334252847	0	0	TRUE
Flavonifractor plautii (SP28) 	5.38315408626352	1.29405934351215	4.15989739052719	0	0	TRUE
Oscillospiraceae_[G-2] bacterium_MOT-149 (SP29) 	-3.86995320554037	0.448918050281855	-8.62062285780358	0	0	TRUE
Robinsoniella peoriensis (SP30) 	4.0586639749315	1.81793317058511	2.23257050402199	0	0	TRUE
Lachnospiraceae_[G-9] bacterium_MOT-174 (SP31) 	-2.26541514347437	1.75483126691504	-1.29095895781304	0	0	TRUE
Eubacteriales_[G-2] bacterium_MOT-162 (SP35) 	0.342312890211366	1.32179133152663	0.258976498064945	0	0	TRUE
Lawsonibacter asaccharolyticus (SP36) 	0.230488644781988	1.61838787317853	0.14241866773835	0	0	TRUE
Bacteroides stercorirosoris (SP4) 	-0.188834875279994	2.22609598788685	-0.0848278224782425	0.93239827411611	1	FALSE
Oscillospiraceae_[G-7] bacterium_MOT-154 (SP43) 	1.03313718099928	0.985158626540722	1.04870134937257	0	0	TRUE
Clostridium tertium (SP44) 	3.86763713576069	1.85693788742654	2.08280371785655	0	0	TRUE
Muribaculum intestinale (SP5) 	8.14836482960517	0.487590923112367	16.7114776821376	0	0	TRUE
Lachnospiraceae_[G-14] bacterium_MOT-184 (SP6) 	-4.44058673567823	0.484850504937486	-9.15867198333799	0	0	TRUE
Parabacteroides goldsteinii (SP8) 	6.34334436854702	0.749403906798969	8.46452001517074	2.57209749526607e-17	3.31800576889324e-15	TRUE
Akkermansia muciniphila (SP9) 	6.16088337493822	1.60431456466749	3.84019662391779	0	0	TRUE
Prevotellamassilia timonensis_nov_92.641% (SPN1) 	3.58682264178656	1.18961871991973	3.01510272302086	0	0	TRUE
Anaerotaenia torta_nov_97.273% (SPN100) 	0.0887327329805419	1.78828323338396	0.0496189481196631	0	0	TRUE
Oscillospiraceae_[G-3] bacterium_MOT-150_nov_90.745% (SPN101) 	0.5900918652393	1.38649051924662	0.425601082047022	0	0	TRUE
Kineothrix alysoides_nov_95.227% (SPN102) 	-2.33536375174433	2.05756986188497	-1.13501067205799	0	0	TRUE
Anaerotruncus rubiinfantis_nov_92.760% (SPN103) 	-1.5329397535016	1.54108349066995	-0.994715576918676	0	0	TRUE
Muribaculaceae_[G-2] bacterium_MOT-104_nov_91.991% (SPN104) 	-0.0420362748630108	1.83712454760451	-0.0228815596187113	0	0	TRUE
Alistipes putredinis_nov_95.887% (SPN106) 	0.0516575212771333	1.81813731704046	0.0284123321120875	0	0	TRUE
Oscillibacter valericigenes_nov_95.260% (SPN107) 	-0.0330871915176132	1.62274084051387	-0.0203896954409156	0	0	TRUE
Kineothrix alysoides_nov_97.279% (SPN108) 	-1.61334150638449	1.55354193771711	-1.03849240707029	0	0	TRUE
Lachnospiraceae_[G-9] bacterium_MOT-174_nov_96.364% (SPN11) 	0.141754297857103	1.74561516637145	0.0812059270496392	0	0	TRUE
Muribaculaceae_[G-1] bacterium_MOT-129_nov_91.522% (SPN110) 	6.10941723148281	1.79037477271279	3.41236780399099	0	0	TRUE
Saccharofermentans acetigenes_nov_88.764% (SPN111) 	-1.57075648206894	1.4895220114886	-1.0545372743429	0	0	TRUE
Lacrimispora indolis_nov_90.724% (SPN112) 	2.27393490616299	2.37942030112132	0.955667607396384	0.339240192887668	1	FALSE
Lawsonibacter asaccharolyticus_nov_97.973% (SPN114) 	-3.87868766406896	0.470730642987886	-8.23971781282311	0	0	TRUE
Muribaculaceae_[G-2] bacterium_MOT-104_nov_90.870% (SPN116) 	-0.181819323373217	1.94966824414828	-0.0932565445013161	0	0	TRUE
Muribaculaceae_[G-2] bacterium_MOT-104_nov_93.043% (SPN117) 	6.22759988463225	1.6500097810204	3.77428058685869	0	0	TRUE
Muribaculaceae_[G-2] bacterium_MOT-104_nov_91.106% (SPN118) 	0.089823841428865	1.5239448102678	0.0589416629943971	0	0	TRUE
Alistipes putredinis_nov_95.879% (SPN119) 	-1.3567886872185	1.45013118556854	-0.935631686788775	0	0	TRUE
Odoribacter splanchnicus_nov_93.939% (SPN120) 	-1.25031666678023	1.52261834806426	-0.821162222542368	0	0	TRUE
Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.506% (SPN121) 	-4.19230839172631	0.417752985629085	-10.0353762532977	0	0	TRUE
Ruthenibacterium lactatiformans_nov_97.045% (SPN122) 	-3.10916599851821	0.357846111745141	-8.68855604817236	0	0	TRUE
Lachnospiraceae_[G-10] bacterium_MOT-175_nov_95.475% (SPN123) 	0.15878485157634	1.67583697747537	0.0947495810812979	0	0	TRUE
Lachnospiraceae_[G-11] bacterium_MOT-178_nov_97.978% (SPN124) 	-0.0571413402670233	1.64209915572831	-0.0347977404821694	0	0	TRUE
Lachnospiraceae_[G-9] bacterium_MOT-174_nov_96.388% (SPN125) 	0.0182963684248054	1.84501302272606	0.009916660857912	0	0	TRUE
Muribaculaceae_[G-2] bacterium_MOT-104_nov_90.022% (SPN127) 	4.26920462411605	1.98740826706234	2.14812663048168	0	0	TRUE
Enterocloster asparagiformis_nov_94.344% (SPN129) 	0.344652081097581	1.31992473438731	0.261114950056273	0	0	TRUE
Prevotellamassilia timonensis_nov_94.168% (SPN13) 	4.15287402800177	2.74248440284955	1.51427443805579	0.129956248962273	1	FALSE
Mailhella massiliensis_nov_92.094% (SPN132) 	-0.784599220541835	1.26109134297316	-0.622158914113277	0.533837379083218	1	FALSE
Anaerotruncus rubiinfantis_nov_92.517% (SPN133) 	2.10789273883364	1.71086495182879	1.23206261054121	0.217925696853327	1	FALSE
Neglectibacter timonensis_nov_97.727% (SPN134) 	-3.43752090406114	0.451471668406473	-7.61403459976638	0	0	TRUE
Butyricicoccus pullicaecorum_nov_94.820% (SPN135) 	0.319781793167191	1.33977715860292	0.238682822075164	0	0	TRUE
Lachnospiraceae_[G-11] bacterium_MOT-176_nov_95.946% (SPN136) 	2.12149225011181	2.15252847770593	0.985581501979848	0.324338518980213	1	FALSE
Eubacterium coprostanoligenes_nov_95.701% (SPN137) 	0.478635469764488	1.47542711261725	0.324404686393108	0	0	TRUE
Lachnospiraceae_[G-14] bacterium_MOT-184_nov_95.405% (SPN138) 	0.49665787685458	1.46102762952792	0.339937361085402	0	0	TRUE
Acetatifactor muris_nov_96.145% (SPN139) 	0.0272334542416917	1.57422871366371	0.0172995537467432	0	0	TRUE
Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.056% (SPN14) 	-3.95176730379565	0.529530300766229	-7.46277842472367	0	0	TRUE
Petrocella atlantisensis_nov_87.810% (SPN142) 	-0.815905707204328	1.1891012061494	-0.686153292070427	0	0	TRUE
Lachnospiraceae_[G-6] bacterium_MOT-171_nov_95.238% (SPN144) 	4.31954455974532	1.78131839241216	2.42491436575582	0	0	TRUE
Muribaculaceae_[G-2] bacterium_MOT-104_nov_92.208% (SPN146) 	2.15006909776098	2.39039711912935	0.899461047938384	0.368407134639517	1	FALSE
Eubacteriales_[G-2] bacterium_MOT-162_nov_95.260% (SPN147) 	0.429767645033863	1.2521018846105	0.343236960439168	0	0	TRUE
Anaerosporobacter mobilis_nov_95.000% (SPN148) 	0.035486970801909	1.83116287514105	0.0193794726201925	0	0	TRUE
Oscillospiraceae_[G-4] bacterium_MOT-151_nov_92.568% (SPN15) 	0.580429352948216	1.13259503183646	0.512477396273824	0	0	TRUE
Alistipes putredinis_nov_96.529% (SPN150) 	1.95086959761298	0.502819590356043	3.87985996375278	0.0001045166205459	0.0121239279833243	TRUE
Clostridium oryzae_nov_88.889% (SPN152) 	-1.20900722650781	1.58934578223873	-0.760694897245594	0	0	TRUE
Rhodospirillum rubrum_nov_88.036% (SPN154) 	0.600042852955861	1.117098819048	0.537143932769726	0	0	TRUE
Phocea massiliensis_nov_95.682% (SPN158) 	-2.75893498055558	1.21503675368704	-2.27065969172008	0.0231675869196516	1	FALSE
Oscillospiraceae_[G-2] bacterium_MOT-149_nov_96.171% (SPN159) 	3.87604599007592	1.42247215090594	2.72486599305818	0	0	TRUE
Lachnospiraceae_[G-6] bacterium_MOT-171_nov_95.485% (SPN160) 	0.191227632896529	1.70583256699408	0.112102228903684	0	0	TRUE
Muribaculum intestinale_nov_93.737% (SPN162) 	0.00706132643905155	1.40926807239448	0.00501063394351488	0.996002109265451	1	FALSE
Falcatimonas natans_nov_92.955% (SPN164) 	3.58398574523059	1.18734177248665	3.01849545621954	0	0	TRUE
Kineothrix alysoides_nov_95.465% (SPN167) 	0.211065675407331	1.63394137813065	0.129175794329174	0	0	TRUE
Duncaniella freteri_nov_88.462% (SPN171) 	0.0707103258904489	1.74650800126199	0.040486688775176	0	0	TRUE
Lachnoclostridium [Clostridium] populeti_nov_94.331% (SPN172) 	-0.104278558283634	1.68005443809313	-0.0620685591604939	0	0	TRUE
Lachnospiraceae_[G-14] bacterium_MOT-184_nov_95.227% (SPN173) 	3.92247854137222	1.45996078251318	2.6867013061954	0	0	TRUE
Eubacteriales_[G-4] bacterium_MOT-164_nov_96.606% (SPN177) 	0.392532981840529	1.54430877849176	0.254180373321386	0	0	TRUE
Anaerotruncus colihominis_nov_94.091% (SPN180) 	0.118331232574918	1.708283313725	0.0692690911537913	0	0	TRUE
Mageeibacillus indolicus_nov_87.668% (SPN181) 	0.120720729067789	1.76253766178426	0.0684925671009949	0	0	TRUE
Lachnospiraceae_[G-12] bacterium_MOT-179_nov_94.796% (SPN182) 	-5.24564824603353	0.775287301914492	-6.76607011759376	0	0	TRUE
Lachnoclostridium [Clostridium] populeti_nov_92.955% (SPN185) 	0.152131270722162	1.47394835662255	0.103213433522705	0	0	TRUE
Roseburia faecis_nov_95.475% (SPN186) 	0.160131654755343	1.46753340834272	0.109116190367468	0	0	TRUE
Muricomes intestini_nov_94.331% (SPN187) 	0.44211473559398	1.24228001744453	0.355889758657993	0	0	TRUE
Eubacteriales_[G-2] bacterium_MOT-162_nov_95.692% (SPN189) 	0.468271940741144	1.42856079199169	0.327792799134773	0	0	TRUE
Gracilibacter thermotolerans_nov_88.315% (SPN192) 	3.52149809313246	1.13723215915847	3.09655162736367	0	0	TRUE
Lachnospiraceae_[G-11] bacterium_MOT-176_nov_97.297% (SPN193) 	-0.0368452170420197	1.88945911051717	-0.0195004045533088	0	0	TRUE
Oscillospiraceae_[G-2] bacterium_MOT-149_nov_93.919% (SPN195) 	-1.6239681288645	1.79557913117022	-0.904425820434947	0	0	TRUE
Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.291% (SPN197) 	0.571039060625983	1.34693142901493	0.423955554325144	0	0	TRUE
Oscillibacter ruminantium_nov_93.919% (SPN198) 	-1.03616918909119	1.31820855212058	-0.786043443144349	0	0	TRUE
Acetatifactor muris_nov_92.551% (SPN2) 	4.29074025729729	1.75796894630181	2.44073723049751	0	0	TRUE
Alistipes sp._MOT-127_nov_91.775% (SPN200) 	3.28699477060063	0.950147293779001	3.45945811993774	0	0	TRUE
Kineothrix alysoides_nov_97.059% (SPN204) 	-5.10031404405432	0.432728051358897	-11.7864188097762	0	0	TRUE
Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351_nov_96.847% (SPN208) 	0.280762941360184	1.37095240351753	0.204794083762365	0	0	TRUE
Christensenella hongkongensis_nov_86.353% (SPN21) 	-1.14693882240551	1.30251931528327	-0.880554176009341	0	0	TRUE
Mediterraneibacter [Ruminococcus] gnavus_nov_97.045% (SPN210) 	0.294612608997809	1.56708513430599	0.188000385268337	0	0	TRUE
Muribaculum intestinale_nov_92.688% (SPN212) 	3.64853678616509	1.67945901572235	2.17244764653922	0	0	TRUE
Algimonas porphyrae_nov_83.596% (SPN215) 	-1.12690607440204	1.35683159694755	-0.830542328861761	0	0	TRUE
Duncaniella freteri_nov_90.456% (SPN216) 	2.63564488398436	2.17458358094483	1.21202280155137	0.225503652502035	1	FALSE
Pseudoflavonifractor capillosus_nov_90.112% (SPN22) 	0.643113430115862	1.28987081628377	0.498587472479396	0	0	TRUE
Christensenella massiliensis_nov_87.416% (SPN221) 	0.585225598765582	1.12880415468942	0.518447417414583	0	0	TRUE
Lachnospiraceae_[G-9] bacterium_MOT-174_nov_96.136% (SPN226) 	0.366478057557418	1.30251488041327	0.281361896949031	0	0	TRUE
Peptostreptococcaceae_[XI][G-2] bacterium_HMT_091_nov_93.002% (SPN23) 	0.78406571372254	0.972616978814941	0.806140269808845	0	0	TRUE
Peptococcus sp._HMT_168_nov_89.979% (SPN25) 	1.0521899856126	1.0220682414575	1.02947136300032	0	0	TRUE
Parabacteroides goldsteinii_nov_93.074% (SPN27) 	3.19110074645004	1.12812832604077	2.82866822221314	0	0	TRUE
Saccharofermentans acetigenes_nov_88.739% (SPN3) 	3.57239037320212	1.61785557381842	2.20810215139949	0	0	TRUE
Roseburia faecis_nov_97.964% (SPN38) 	-1.98992706825573	1.91807811783537	-1.03745882388849	0	0	TRUE
Duncaniella freteri_nov_93.103% (SPN49) 	6.88912220084728	1.88667225318814	3.65146738613763	0	0	TRUE
Muribaculaceae_[G-2] bacterium_MOT-104_nov_93.074% (SPN60) 	3.43166337385738	2.05050797826914	1.6735674331558	0.0942156434200892	1	FALSE
Muribaculaceae_[G-2] bacterium_MOT-104_nov_92.441% (SPN63) 	5.7590206947773	1.87159456319734	3.0770663732528	0	0	TRUE
Lacrimispora xylanolytica_nov_97.285% (SPN72) 	3.97223644228814	1.50015951893674	2.6478760372787	0	0	TRUE
Hydrogenoanaerobacterium saccharovorans_nov_93.636% (SPN74) 	3.99623995428023	1.51956034807771	2.62986590781708	0	0	TRUE
Culturomica massiliensis_nov_93.709% (SPN78) 	-2.49733374870569	0.832318405327827	-3.00045479316544	0	0	TRUE
Kineothrix alysoides_nov_95.928% (SPN79) 	4.42760032688893	1.86895086530086	2.36902981725856	0	0	TRUE
Gracilibacter thermotolerans_nov_87.668% (SPN8) 	3.28699477060063	0.950147293779001	3.45945811993774	0	0	TRUE
Lachnospiraceae_[G-10] bacterium_MOT-175_nov_96.372% (SPN80) 	3.90117203546779	1.44275542372115	2.70397322465501	0	0	TRUE
Oscillospiraceae_[G-4] bacterium_MOT-151_nov_96.847% (SPN81) 	-1.35294767243612	1.38709072304288	-0.975385135204524	0	0	TRUE
Muribaculaceae_[G-2] bacterium_MOT-104_nov_92.191% (SPN82) 	-4.09721032064067	0.407226606598507	-10.0612539904108	0	0	TRUE
Eubacterium coprostanoligenes_nov_95.485% (SPN86) 	-1.81801642919631	1.58528678149211	-1.14680602299929	0	0	TRUE
Lachnospiraceae_[G-12] bacterium_MOT-179_nov_92.534% (SPN88) 	-0.245370267702363	2.27512510033604	-0.107849132193268	0.914115368294401	1	FALSE
Lachnospiraceae_[G-14] bacterium_MOT-184_nov_94.989% (SPN89) 	-3.84019791767611	0.37707080301355	-10.1842886985289	0	0	TRUE
Pseudoflavonifractor capillosus_nov_95.721% (SPN90) 	-2.25392727446165	1.62057595386089	-1.39081865869468	0.164280423562325	1	FALSE
Anaerotignum lactatifermentans_nov_95.270% (SPN91) 	0.201762746034972	1.64139317021781	0.122921643452555	0	0	TRUE
Alistipes timonensis_nov_97.831% (SPN94) 	-4.07244719419799	0.44681971459472	-9.11429612700019	0	0	TRUE
Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.946% (SPN95) 	1.99509630376872	1.91436305369549	1.04217238204498	0.297331765028749	1	FALSE
Oscillospiraceae_[G-2] bacterium_MOT-149_nov_94.157% (SPN96) 	-3.28774690799953	0.64462837157889	-5.10022061229921	0	0	TRUE
Alistipes senegalensis_nov_95.228% (SPN97) 	0.290596496159084	1.36309238685206	0.213189141808788	0	0	TRUE
Oscillospiraceae_[G-4] bacterium_MOT-151_nov_91.723% (SPN98) 	-0.041299626312741	1.62934924233364	-0.0253473136634535	0	0	TRUE
Clostridium disporicum_saudiense (SPP1) 	-1.64315942066708	1.50226246276574	-1.0937898412518	0	0	TRUE
Blautia hansenii_hominis_marasmi (SPP5) 	3.8956255957998	1.6870541292977	2.30912898889706	0	0	TRUE
multigenus multispecies_sppn10_2_nov_95.918% (SPPN10) 	-3.81173364604158	0.498796354484027	-7.64186348150956	0	0	TRUE
multigenus multispecies_sppn11_2_nov_95.465% (SPPN11) 	0.201762746034972	1.69736501628107	0.118868212847367	0	0	TRUE
Alistipes multispecies_sppn12_2_nov_96.304% (SPPN12) 	4.11693586335134	2.23412170117026	1.84275362492332	0.0653649905929053	1	FALSE
multigenus multispecies_sppn14_2_nov_82.889% (SPPN14) 	4.02627605878028	1.5438445440924	2.60795432686992	0	0	TRUE
multigenus multispecies_sppn17_2_nov_95.928% (SPPN17) 	-1.57486334080878	1.74449935723683	-0.902759484705832	0	0	TRUE
multigenus multispecies_sppn19_3_nov_96.818% (SPPN19) 	0.164205025200268	1.67149150575796	0.0982386237887622	0	0	TRUE
Bacteroidetes_[G-3] multispecies_sppn2_2_nov_87.554% (SPPN2) 	-4.19024768383288	0.375481526376116	-11.1596640300102	0	0	TRUE
multigenus multispecies_sppn23_2_nov_96.818% (SPPN23) 	-0.133485788723782	1.91073092428838	-0.069861112847952	0	0	TRUE
Anaerotignum multispecies_sppn26_2_nov_94.808% (SPPN26) 	0.258282514428341	1.38892895890188	0.185958045422672	0	0	TRUE
multigenus multispecies_sppn5_2_nov_97.279% (SPPN5) 	-3.92457222873037	0.488693538299456	-8.03074303455495	0	0	TRUE
Bacteroides multispecies_sppn6_2_nov_96.312% (SPPN6) 	6.05119919199406	1.43917738736244	4.20462358923247	2.61517010396813e-05	0.00311205242372208	TRUE
multigenus multispecies_sppn8_3_nov_95.011% (SPPN8) 	-0.184709514890262	1.7448751786689	-0.105858296999313	0	0	TRUE
multigenus multispecies_sppn9_2_nov_93.002% (SPPN9) 	-5.15099464704381	0.370342781171068	-13.9087216193488	0	0	TRUE
